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DX-24413, DX-24414 : Gandiva cache peformance improvements #15

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projjal wants to merge 1 commit into dremio:rel-460 from projjal:gandivacache

+271 −11

projjal commented Aug 5, 2020 •

edited

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Prewarm the gandiva cache on gandiva startup time
Make the cache size configurable

projjal requested review from pravindra and vvellanki

August 5, 2020 09:22

projjal changed the title ~~Prewarm the gandiva cache during loading time. Make the cache size co…~~ DX-24413, DX-24414 : Gandiva cache peformance improvements

projjal force-pushed the gandivacache branch from c93f763 to 7cbaf22 Compare

August 5, 2020 09:33

projjal requested a review from praveenbingo

August 5, 2020 09:34


          Prewarm gandiva cache on startup. Make cache size configurable

c4c56e2

projjal force-pushed the gandivacache branch from 7cbaf22 to c4c56e2 Compare

August 6, 2020 07:35

praveenbingo suggested changes

View reviewed changes

cpp/src/gandiva/cache.h

@@ @@ -42,8 +49,24 @@ class Cache { @@
                 }
                private:
+                static int GetCapacity() {
+                  int capacity;
+                  const char* env_cache_size = std::getenv("GANDIVA_CACHE_SIZE");

praveenbingo Aug 5, 2020

cant we instead pass this as a configuration (that is in turn passed from a support option) ? that way we can support other customers too..

https://github.com/apache/arrow/blob/master/cpp/src/gandiva/configuration.h

cpp/src/gandiva/jni/jni_common.cc

+                        std::ifstream fin;
+                        fin.open(dir_iter->path().string(), std::ios::binary);
+                        if (!fin.is_open()) {
+                          std::cerr << "[Gandiva Cache Prewarm] Failure opening warmup cache file"

praveenbingo Aug 6, 2020

maybe also mention which file..

cpp/src/gandiva/jni/jni_common.cc

+                        int32_t schema_len;
+                        if (remaining < sizeof(schema_len)) {
+                          std::cerr << "[Gandiva Cache Prewarm] Invalid file." << std::endl;

praveenbingo Aug 6, 2020

across the board - file name along with errors.

cpp/src/gandiva/jni/jni_common.cc

@@ @@ -117,6 +128,9 @@ jint JNI_OnLoad(JavaVM* vm, void* reserved) { @@
                     env->GetFieldID(vector_expander_ret_class_, "address", "J");
                 vector_expander_ret_capacity_ =
                     env->GetFieldID(vector_expander_ret_class_, "capacity", "J");
+                PrewarmCache();

praveenbingo Aug 6, 2020

is this going to block all queries until the cache is warmed? should we do this in the background instead for e.g. if we have a 100 expression list this is going to take upto a minute to prepare the cache during which no query can progress

praveenbingo reviewed

View reviewed changes

cpp/src/gandiva/jni/jni_common.cc

+                  }
+                  fs::path path(env_path);
+                  if (!fs::is_directory(path) && !fs::create_directories(path)) {

praveenbingo Aug 6, 2020

is this thread safe? two threads trying to create the directory at the same time

cpp/src/gandiva/jni/jni_common.cc

                 holder = std::shared_ptr<ProjectorHolder>(
                     new ProjectorHolder(schema_ptr, ret_types, std::move(projector)));
                 module_id = projector_modules_.Insert(holder);
+                if (!cache_hit) {

praveenbingo Aug 6, 2020

so is the expectation, apple will get files from all executors? wont there be duplicates in that case..

also is the expectation that cache size be at-least as big to accommodate all expressions needed?

are new queries expected in this cluster - if yes and new a query comes in now we might evict one of these expressions. is that ok

stevelorddremio pushed a commit to stevelorddremio/arrow that referenced this pull request


          apacheGH-41145: [R][CI] test-r-dev-duckdb fails installing duckdb (ap…

…ache#41152)

### Rationale for this change

An error is received installing R duckdb:

```
dremio#15 18.13 > remotes::install_github('duckdb/duckdb-r', build = FALSE)
dremio#15 18.27 Error: Failed to install 'unknown package' from **GitHub:**
dremio#15 18.27   Line starting 'Roxyg ...' is malformed!
```

Some searching seems to suggest that this is because R cannot process UTF-8 characters in DESCRIPTION files if the `LANG` is set to `C`.

### What changes are included in this PR?

The `LANG` is set to `C.UTF-8` in the dockerfile for this CI job

### Are these changes tested?

The change only affects a test

### Are there any user-facing changes?

No
* GitHub Issue: apache#41145

Authored-by: Weston Pace <[email protected]>
Signed-off-by: Raúl Cumplido <[email protected]>

lriggs pushed a commit to lriggs/arrow that referenced this pull request


          apacheGH-41145: [R][CI] test-r-dev-duckdb fails installing duckdb (ap…

a2c5a9a

…ache#41152)

### Rationale for this change

An error is received installing R duckdb:

```
dremio#15 18.13 > remotes::install_github('duckdb/duckdb-r', build = FALSE)
dremio#15 18.27 Error: Failed to install 'unknown package' from **GitHub:**
dremio#15 18.27   Line starting 'Roxyg ...' is malformed!
```

Some searching seems to suggest that this is because R cannot process UTF-8 characters in DESCRIPTION files if the `LANG` is set to `C`.

### What changes are included in this PR?

The `LANG` is set to `C.UTF-8` in the dockerfile for this CI job

### Are these changes tested?

The change only affects a test

### Are there any user-facing changes?

No
* GitHub Issue: apache#41145

Authored-by: Weston Pace <[email protected]>
Signed-off-by: Raúl Cumplido <[email protected]>

lriggs pushed a commit to lriggs/arrow that referenced this pull request


          apacheGH-40633: [C++][Python] Fix ORC crash when file contains unknow…

1e5d6e5

…n timezone (apache#45051)

### Rationale for this change

If the timezone database is present on the system, but does not contain a timezone referenced in a ORC file, the ORC reader will crash with an uncaught C++ exception.

This can happen for example on Ubuntu 24.04 where some timezone aliases have been removed from the main `tzdata` package to a `tzdata-legacy` package. If `tzdata-legacy` is not installed, trying to read a ORC file that references e.g. the "US/Pacific" timezone would crash.

Here is a backtrace excerpt:
```
dremio#12 0x00007f1a3ce23a55 in std::terminate() () from /lib/x86_64-linux-gnu/libstdc++.so.6
dremio#13 0x00007f1a3ce39391 in __cxa_throw () from /lib/x86_64-linux-gnu/libstdc++.so.6
dremio#14 0x00007f1a3f4accc4 in orc::loadTZDB(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) ()
   from /tmp/arrow-HEAD.ArqTs/venv-wheel-3.12-manylinux_2_17_x86_64.manylinux2014_x86_64/lib/python3.12/site-packages/pyarrow/libarrow.so.1900
dremio#15 0x00007f1a3f4ad392 in std::call_once<orc::LazyTimezone::getImpl() const::{lambda()dremio#1}>(std::once_flag&, orc::LazyTimezone::getImpl() const::{lambda()dremio#1}&&)::{lambda()dremio#2}::_FUN() () from /tmp/arrow-HEAD.ArqTs/venv-wheel-3.12-manylinux_2_17_x86_64.manylinux2014_x86_64/lib/python3.12/site-packages/pyarrow/libarrow.so.1900
dremio#16 0x00007f1a4298bec3 in __pthread_once_slow (once_control=0xa5ca7c8, init_routine=0x7f1a3ce69420 <__once_proxy>) at ./nptl/pthread_once.c:116
dremio#17 0x00007f1a3f4a9ad0 in orc::LazyTimezone::getEpoch() const ()
   from /tmp/arrow-HEAD.ArqTs/venv-wheel-3.12-manylinux_2_17_x86_64.manylinux2014_x86_64/lib/python3.12/site-packages/pyarrow/libarrow.so.1900
dremio#18 0x00007f1a3f4e76b1 in orc::TimestampColumnReader::TimestampColumnReader(orc::Type const&, orc::StripeStreams&, bool) ()
   from /tmp/arrow-HEAD.ArqTs/venv-wheel-3.12-manylinux_2_17_x86_64.manylinux2014_x86_64/lib/python3.12/site-packages/pyarrow/libarrow.so.1900
dremio#19 0x00007f1a3f4e84ad in orc::buildReader(orc::Type const&, orc::StripeStreams&, bool, bool, bool) ()
   from /tmp/arrow-HEAD.ArqTs/venv-wheel-3.12-manylinux_2_17_x86_64.manylinux2014_x86_64/lib/python3.12/site-packages/pyarrow/libarrow.so.1900
dremio#20 0x00007f1a3f4e8dd7 in orc::StructColumnReader::StructColumnReader(orc::Type const&, orc::StripeStreams&, bool, bool) ()
   from /tmp/arrow-HEAD.ArqTs/venv-wheel-3.12-manylinux_2_17_x86_64.manylinux2014_x86_64/lib/python3.12/site-packages/pyarrow/libarrow.so.1900
dremio#21 0x00007f1a3f4e8532 in orc::buildReader(orc::Type const&, orc::StripeStreams&, bool, bool, bool) ()
   from /tmp/arrow-HEAD.ArqTs/venv-wheel-3.12-manylinux_2_17_x86_64.manylinux2014_x86_64/lib/python3.12/site-packages/pyarrow/libarrow.so.1900
dremio#22 0x00007f1a3f4925e9 in orc::RowReaderImpl::startNextStripe() ()
   from /tmp/arrow-HEAD.ArqTs/venv-wheel-3.12-manylinux_2_17_x86_64.manylinux2014_x86_64/lib/python3.12/site-packages/pyarrow/libarrow.so.1900
dremio#23 0x00007f1a3f492c9d in orc::RowReaderImpl::next(orc::ColumnVectorBatch&) ()
   from /tmp/arrow-HEAD.ArqTs/venv-wheel-3.12-manylinux_2_17_x86_64.manylinux2014_x86_64/lib/python3.12/site-packages/pyarrow/libarrow.so.1900
dremio#24 0x00007f1a3e6b251f in arrow::adapters::orc::ORCFileReader::Impl::ReadBatch(orc::RowReaderOptions const&, std::shared_ptr<arrow::Schema> const&, long) ()
   from /tmp/arrow-HEAD.ArqTs/venv-wheel-3.12-manylinux_2_17_x86_64.manylinux2014_x86_64/lib/python3.12/site-packages/pyarrow/libarrow.so.1900
```

### What changes are included in this PR?

Catch C++ exceptions when iterating ORC batches instead of letting them slip through.

### Are these changes tested?

Yes.

### Are there any user-facing changes?

No.
* GitHub Issue: apache#40633

Authored-by: Antoine Pitrou <[email protected]>
Signed-off-by: Sutou Kouhei <[email protected]>

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